| 1 | FC Petržalka | 12 | 9 | 2 | 1 | 22:8 | 29 |
| 2 | FC ŠTK 1914 Šamorín | 12 | 9 | 1 | 2 | 23:13 | 28 |
| 3 | MŠK Považská Bystrica | 12 | 7 | 2 | 3 | 25:21 | 23 |
| 4 | FK POHRONIE Žiar nad Hronom Dolná Ždaňa | 12 | 7 | 1 | 4 | 21:16 | 22 |
| 5 | MŠK Žilina B | 12 | 6 | 2 | 4 | 16:13 | 20 |
| 6 | FK Inter Bratislava | 12 | 5 | 4 | 3 | 27:15 | 19 |
| 7 | FC Slovan Galanta | 12 | 6 | 1 | 5 | 18:19 | 19 |
| 8 | FC TATRAN Prešov | 12 | 5 | 3 | 4 | 17:18 | 18 |
| 9 | MFK Tatran Liptovský Mikuláš | 12 | 4 | 4 | 4 | 17:14 | 16 |
| 10 | FK Baník Lehota pod Vtáčnikom | 12 | 4 | 4 | 4 | 18:19 | 16 |
| 11 | ŠK Slovan Bratislava futbal B | 12 | 4 | 3 | 5 | 18:16 | 15 |
| 12 | FC ViOn Zlaté Moravce - Vráble | 12 | 3 | 4 | 5 | 13:14 | 13 |
| 13 | OFK Dynamo Malženice | 12 | 3 | 2 | 7 | 16:21 | 11 |
| 14 | MFK Bytča | 12 | 3 | 0 | 9 | 13:31 | 9 |
| 15 | Futbalový klub Humenné, s. r. o. | 12 | 2 | 2 | 8 | 7:19 | 8 |
| 16 | MFK Zvolen | 12 | 0 | 3 | 9 | 7:21 | 3 |